Glassy dynamics of side-chain ordering in a simple model of protein folding.
Publication information:
Kussell, E. & Shakhnovich, E. I. Glassy dynamics of side-chain ordering in a simple model of protein folding. Physical review letters 89, 168101 (2002).
Abstract
We introduce a modified version of protein lattice models in which monomers have several spin states, representing side-chain rotamers. Completion of folding corresponds to reaching the native backbone configuration with complete ordering of side chains. We find that as temperature is lowered, side-chain ordering becomes much slower than backbone folding. The presence of side chains leads to nonexponential kinetics and a broad distribution of relaxation times.